PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g21250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 364aa    MW: 38866.3 Da    PI: 7.1097
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g21250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12178223555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Vradi07g21250.1 178 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 223
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.36E-13171227No hitNo description
SuperFamilySSF474593.93E-17171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16175232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9178223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MQPCSREMQG ANNNSLFNNG GNNQQQIHFD ATSNEDFLKQ MLSNLPSSSP WTLDPKHNPL  60
WDPNSDETTP ENNVVFPYDL EQANLASKFR NHQITDDKAS ALMLQHHHQL LLSSAAANSP  120
LLQMPVSSLN DVVHASSFKS PAPGQSFGAS APATGGGGGS GQPKQRIRAR RGQATDPHSI  180
AERLRRERIA ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV  240
APLVADISSE GGADCVQPKR NNTNGNSNGN HASSNDTLTT TEQQVAKLME EDMGSAMQYL  300
QGKGLCLMPI SLATAISKAT CHTRNPFTNN ADGPSSPGIS ALTLHSSTLS NGLVKDTASV  360
SKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505733.10.0PREDICTED: transcription factor bHLH82-like isoform X1
SwissprotQ9ZUG93e-85BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0S3R6B20.0A0A0S3R6B2_PHAAN; Uncharacterized protein
STRINGGLYMA17G08300.21e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-64LJRHL1-like 1